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Diffstat (limited to 'vim71/syntax/acedb.vim')
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1 files changed, 123 insertions, 0 deletions
diff --git a/vim71/syntax/acedb.vim b/vim71/syntax/acedb.vim new file mode 100644 index 0000000..114e4ab --- /dev/null +++ b/vim71/syntax/acedb.vim @@ -0,0 +1,123 @@ +" Vim syntax file +" Language: AceDB model files +" Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk) +" Last change: Thu Apr 26 10:38:01 BST 2001 +" URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim + +" Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm +" AceDB software is available from http://www.acedb.org + +" For version 5.x: Clear all syntax items +" For version 6.x: Quit when a syntax file was already loaded +if version < 600 + syntax clear +elseif exists("b:current_syntax") + finish +endif + +syn keyword acedbXref XREF +syn keyword acedbModifier UNIQUE REPEAT + +syn case ignore +syn keyword acedbModifier Constraints +syn keyword acedbType DateType Int Text Float + +" Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html +syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title +syn keyword acedbMagic Flipped Centre Extent View Default_view +syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes +syn keyword acedbMagic Mapping_data More_data Position Ends Left Right +syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative +syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge +syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag +syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit +syn keyword acedbMagic Locator Magnification Projection_lines_on +syn keyword acedbMagic Marker_points Marker_intervals Contigs +syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood +syn keyword acedbMagic Point_query Point_yellow Point_width +syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne +syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates +syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all +syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap +syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid +syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling +syn keyword acedbMagic DNA Structure From Source Source_Exons +syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele +syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive +syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol +syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title +syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant +syn keyword acedbMagic Tested Selected_trans Backcross Back_one +syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc +syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B +syn keyword acedbMagic Score Score_by_offset Score_by_width +syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X +syn keyword acedbMagic Journal Year Volume Page Author +syn keyword acedbMagic Selected One_all Recs_all One_let +syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected +syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid +syn keyword acedbMagic Reversed_physical Points Positive Negative +syn keyword acedbMagic Point_error_scale Point_segregate_ordered +syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD +syn keyword acedbMagic EMBL_feature Homol Feature +syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width +syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query +syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to +syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A +syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence +syn keyword acedbMagic Visible Properties Transposon + +syn match acedbClass "^?\w\+\|^#\w\+" +syn match acedbComment "//.*" +syn region acedbComment start="/\*" end="\*/" +syn match acedbComment "^#\W.*" +syn match acedbHelp "^\*\*\w\+$" +syn match acedbTag "[^^]?\w\+\|[^^]#\w\+" +syn match acedbBlock "//#.\+#$" +syn match acedbOption "^_[DVH]\S\+" +syn match acedbFlag "\s\+-\h\+" +syn match acedbSubclass "^Class" +syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden" +syn match acedbNumber "\<\d\+\>" +syn match acedbNumber "\<\d\+\.\d\+\>" +syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>" +syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline + +" Rest of syntax highlighting rules start here + +" Define the default highlighting. +" For version 5.7 and earlier: only when not done already +" For version 5.8 and later: only when an item doesn't have highlighting yet +if version >= 508 || !exists("did_acedb_syn_inits") + if version < 508 + let did_acedb_syn_inits = 1 + command -nargs=+ HiLink hi link <args> + else + command -nargs=+ HiLink hi def link <args> + endif + + HiLink acedbMagic Special + HiLink acedbHyb Special + HiLink acedbType Type + HiLink acedbOption Type + HiLink acedbSubclass Type + HiLink acedbSubtag Include + HiLink acedbFlag Include + HiLink acedbTag Include + HiLink acedbClass Todo + HiLink acedbHelp Todo + HiLink acedbXref Identifier + HiLink acedbModifier Label + HiLink acedbComment Comment + HiLink acedbBlock ModeMsg + HiLink acedbNumber Number + HiLink acedbString String + + delcommand HiLink +endif + +let b:current_syntax = "acedb" + +" The structure of the model.wrm file is sensitive to mixed tab and space +" indentation and assumes tabs are 8 so... +se ts=8 |